SOFT : HipMer
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Site du soft: https://portal.nersc.gov/project/hipmer/
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LICENSE:
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MIT

See software documentation for more informations.

Location: /usr/local/bioinfo/src/HipMer
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Load binaries and environment:
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-> Version v1.2.2

#Need gcc-7.2.0
module load compiler/gcc-7.2.0

module load bioinfo/HipMer-1.2.2

Warning! "In the case of generic, the number of threads by default is all those available on the single node, and the CORES_PER_NODE is the same value.  ". Don't forget to adjust --cpus-per-task or --ntasks-per-node of Slurm command
Warning! Only run on Broadwell node (add --constraint=broadwell sbatch option)

Example directory for use on cluster:
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/usr/local/bioinfo/src/HipMer/example_on_cluster

To submit: sbatch test_HipMer-1.2.2.sh

See software documentation and our FAQ (http://bioinfo.genotoul.fr/index.php/faq/) for more informations.