SOFT : HiFiAdapterFilt
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Site du soft: https://github.com/sheinasim/HiFiAdapterFilt
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LICENSE:
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GPLv3

See software documentation for more informations.

Location: /usr/local/bioinfo/src/HiFiAdapterFilt
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Load binaries and environment:
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-> Version a2103db

#Need Bamtools, Blast+, pigz (optional)
module load bioinfo/bamtools-2.5.0 bioinfo/ncbi-blast-2.13.0+ system/pigz-2.4

module load bioinfo/HiFiAdapterFilt-a2103db

Warning! By default 8 cpu are used on the node. Don't forget to adjust -t option of HiFiAdapterFilt commands and --cpus-per-task option for Slurm.

Example directory for use on cluster:
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/usr/local/bioinfo/src/HiFiAdapterFilt/example_on_cluster

To submit: sbatch test_HiFiAdapterFilt-a2103db.sh

See software documentation and our FAQ (http://bioinfo.genotoul.fr/index.php/faq/) for more informations.