SOFT : Hapo-G
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Site du soft: https://github.com/institut-de-genomique/HAPO-G
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LICENSE:
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CeCILL. See https://github.com/institut-de-genomique/HAPO-G/blob/master/LICENSE.md

See software documentation for more informations.

Location: /usr/local/bioinfo/src/Hapo-G
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Load binaries and environment:
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-> Version b081656

#Need python>=3.6, bwa, samtools
module load system/Python-3.6.3 bioinfo/bwa-0.7.17 bioinfo/samtools-1.10

module load bioinfo/HAPO-G-b081656

-> Version v1.2

#Need python>=3.6, bwa, samtools
module load system/Python-3.6.3 bioinfo/bwa-0.7.17 bioinfo/samtools-1.10

module load bioinfo/HAPO-G-v1.2

Warning! By default 8 cpu are used on the node. Don't forget to adjust -t option of hapog.py command and --cpus-per-task option for Slurm.

Example directory for use on cluster:
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/usr/local/bioinfo/src/Hapo-G/example_on_cluster

To submit: sbatch test_HAPO-G-b081656.sh

See software documentation and our FAQ (http://bioinfo.genotoul.fr/index.php/faq/) for more informations.