SOFT : GetOrganelle
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Site du soft: https://github.com/Kinggerm/GetOrganelle
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LICENSE:
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GPL-v3

See software documentation for more informations.

Location: /usr/local/bioinfo/src/GetOrganelle
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Load binaries and environment:
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-> Version v1.7.3.5

#Need Miniconda3-4.7.10
module load system/Miniconda3-4.7.10
module load bioinfo/getorganelle-v1.7.3.5

Be careful, to unload, not use module purge but in order:

module unload bioinfo/getorganelle-v1.7.3.5
module unload system/Miniconda3-4.7.10

To download your organelle type database in local path:

get_organelle_config.py --add <dabase> --config-dir <path_to_your_working_directory>

Example directory for use on cluster:
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/usr/local/bioinfo/src/GetOrganelle/example_on_cluster

To submit: sbatch test_getorganelle-v1.7.3.5.sh

See software documentation and our FAQ (http://bioinfo.genotoul.fr/index.php/faq/) for more informations.