SOFT : GenomOrder
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Site du soft: https://forgemia.inra.fr/seqoccin/GenomOrder
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LICENSE:
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NC

See software documentation for more informations.

Location: /usr/local/bioinfo/src/GenomOrder
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Load binaries and environment:
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-> Version e55f00b8

#Need nextflow >v20.01.0, Python3, minimap2, samtools
module load bioinfo/Nextflow-v21.10.6 system/Python-3.6.3 bioinfo/minimap2-2.24 bioinfo/samtools-1.14

nextflow run /usr/local/bioinfo/src/GenomOrder/GenomOrder-e55f00b8/main.nf -profile small --reference ...


Nextflow packages default directory is usually located at your home directory whose allocated space is very limited. 
A simple solution consist in create (or move if it already exist)  .nextflow directory in your work space and making a symbolic link to this
directory in your home

mkdir ~/work/.nextflow (or mv ~/.nextflow ~/work/)
ln -s ~/work/.nextflow ~/.nextflow

Example directory for use on cluster:
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/usr/local/bioinfo/src/GenomOrder/example_on_cluster

To submit: sbatch test_GenomOrder-e55f00b8.sh 

See software documentation and our FAQ (http://bioinfo.genotoul.fr/index.php/faq/) for more informations.