SOFT : GenomOrder ------ Site du soft: https://forgemia.inra.fr/seqoccin/GenomOrder ------------- LICENSE: -------- NC See software documentation for more informations. Location: /usr/local/bioinfo/src/GenomOrder --------- Load binaries and environment: ------------------------------ -> Version e55f00b8 #Need nextflow >v20.01.0, Python3, minimap2, samtools module load bioinfo/Nextflow-v21.10.6 system/Python-3.6.3 bioinfo/minimap2-2.24 bioinfo/samtools-1.14 nextflow run /usr/local/bioinfo/src/GenomOrder/GenomOrder-e55f00b8/main.nf -profile small --reference ... Nextflow packages default directory is usually located at your home directory whose allocated space is very limited. A simple solution consist in create (or move if it already exist) .nextflow directory in your work space and making a symbolic link to this directory in your home mkdir ~/work/.nextflow (or mv ~/.nextflow ~/work/) ln -s ~/work/.nextflow ~/.nextflow Example directory for use on cluster: ------------------------------------- /usr/local/bioinfo/src/GenomOrder/example_on_cluster To submit: sbatch test_GenomOrder-e55f00b8.sh See software documentation and our FAQ (http://bioinfo.genotoul.fr/index.php/faq/) for more informations.