SOFT : GTDB-Tk
------
Site du soft: https://ecogenomics.github.io/GTDBTk/
-------------

LICENSE:
--------

GPL-v3

See software documentation for more informations.

Location: /usr/local/bioinfo/src/GTDB-Tk
---------

Load binaries and environment:
------------------------------

-> Version v2.1.1

#Need Miniconda3
module load system/Miniconda3
module load bioinfo/gtdbtk-v2.1.1

Be careful, to unload, not use module purge but in order:

module unload bioinfo/gtdbtk-v2.1.1
module unload system/Miniconda3

GTDBTK_DATA_PATH (/usr/local/bioinfo/src/Miniconda/Miniconda3/envs/gtdbtk-v2.1.1_env/share/gtdbtk-2.1.1/db/) is defined in the module.

Example directory for use on cluster:
-------------------------------------

/usr/local/bioinfo/src/GTDB-Tk/example_on_cluster

To submit: sbatch test_gtdbtk-v2.1.1.sh 

See software documentation and our FAQ (http://bioinfo.genotoul.fr/index.php/faq/) for more informations.