SOFT : GRIDSS
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Site du soft: https://github.com/PapenfussLab/gridss
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LICENSE:
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GPL-v3

See software documentation for more informations.

Location: /usr/local/bioinfo/src/GRIDSS
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Load binaries and environment:
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-> Version v2.13.2

#Need Miniconda
module load system/Miniconda3
module load bioinfo/gridss-2.13.2


To unload module, unload  in order HiCExplorer module then Miniconda module:

module unload bioinfo/gridss-2.13.2
module unload system/Miniconda3

Warning! By default 8 cpu are used on the node. Don't forget to adjust --threads option of gridss command and --cpus-per-task option for Slurm.


Example directory for use on cluster:
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/usr/local/bioinfo/src/GRIDSS/example_on_cluster

To submit: sbatch test_gridss-2.13.2.sh

See software documentation and our FAQ (http://bioinfo.genotoul.fr/index.php/faq/) for more informations.