SOFT : FLAIR
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Site du soft: https://github.com/BrooksLabUCSC/flair
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LICENSE:
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Free. See https://github.com/BrooksLabUCSC/flair/blob/master/LICENSE.txt

See software documentation for more informations.

Location: /usr/local/bioinfo/src/FLAIR
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Load binaries and environment:
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-> Version 0f71b5f

#Need Python3, bedtools, samtools, minimap2 (If using samtools v1.3+, please specify -v1.3 argument for flair.py)
module load system/Python-3.6.3 bioinfo/bedtools-2.27.1 bioinfo/samtools-1.10 bioinfo/minimap2-2.11

module load bioinfo/flair-0f71b5f

Warning! By default 4 cpus are used on the node. Don't forget to adjust -t option of flair  and --cpus-per-task option for Slurm.


Example directory for use on cluster:
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/usr/local/bioinfo/src/FLAIR/example_on_cluster

To submit: sbatch test_flair-0f71b5f.sh

See software documentation and our FAQ (http://bioinfo.genotoul.fr/index.php/faq/) for more informations.