SOFT : FALCON-Phase
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Site du soft: https://github.com/phasegenomics/FALCON-Phase
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LICENSE:
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See https://github.com/phasegenomics/FALCON-Phase/blob/master/LICENSE.txt

See software documentation for more informations.

Location: /usr/local/bioinfo/src/FALCON-Phase
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Load binaries and environment:
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-> Version v0.1.0-beta

#Need Python-3.6.3
module load  system/Python-3.6.3

module load bioinfo/FALCON-Phase-v0.1.0-beta

#For runnning pipeline
Copy pipeline folder in your working directory and adjust parameters.
cp -r /usr/local/bioinfo/src/FALCON-Phase/FALCON-Phase-v0.1.0-beta/pipeline .
vi pipeline/config.json for adjust data path
vi  pipeline/snakefile for adjust the path to configfile

#Run in cluster mode
snakemake -j 10 --cluster-config pipeline/cluster.config.slurm.json --jobscript pipeline/slurm.sh --cluster  "sbatch -J {cluster.J} -p {cluster.Q} {cluster.CPU}  -e {cluster.E} -o {cluster.O}" -s pipeline/snakefile --verbose -p --latency-wait 60

#Run in localnode mode
#snakemake -s pipeline/snakefile --verbose -p

Example directory for use on cluster:
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/usr/local/bioinfo/src/FALCON-Phase/example_on_cluster

To submit: sbatch test_FALCON-Phase-v0.1.0-beta.sh

See software documentation and our FAQ (http://bioinfo.genotoul.fr/index.php/faq/) for more informations.