SOFT : FALCON + FALCON_unzip
------
Site du soft: https://github.com/PacificBiosciences/FALCON-integrate
-------------

For Verison 2018-05-04:

Help for installation:
https://pb-falcon.readthedocs.io/en/latest/index.html
https://pb-falcon.readthedocs.io/en/latest/quick_start.html#quick-start

Downloads:
https://downloads.pacbcloud.com/public/falcon/ (usc2 versions)

Help for configuration:
https://github.com/PacificBiosciences/FALCON/wiki/Configuration


LICENSE:
--------

Standard PacBio "Open Source License"

See software documentation for more informations.

Location: /usr/local/bioinfo/src/FALCON
---------

Load binaries and environment:
------------------------------

-> Version v0.7.3 (FALCON)

module load bioinfo/FALCON-v0.7.3
or
source /usr/local/bioinfo/src/FALCON/FALCON-v0.7.3/FALCON-integrate/fc_env/bin/activate

-> Version 2018.05.04 (FALCON + FALCON_unzip)

#Need samtools and minimap2 (pour falcon_unzip)
module load bioinfo/samtools-1.3.1 bioinfo/minimap2-2.5

module load bioinfo/FALCON-2018.05.04

-> Version 2018.05.04 modifiée (FALCON + FALCON_unzip) : more memory for job.step.da and job.step.pda

#Need samtools and minimap2 (pour falcon_unzip)
module load bioinfo/samtools-1.3.1 bioinfo/minimap2-2.5

module load bioinfo/FALCON-2018.05.04_modif

-> Version 2018.31.08 modifiée (FALCON + FALCON_unzip) : more memory for job.step.da 

#Need samtools and minimap2 (pour falcon_unzip)
module load bioinfo/samtools-1.3.1 bioinfo/minimap2-2.5

module load bioinfo/FALCON-2018.31.08_modif



Example directory for use on cluster:
-------------------------------------

/usr/local/bioinfo/src/FALCON/example_on_cluster

To submit:

cd test_FALCON_v0.7.3
sbatch test_Falcon_v0.7.3.sh

or

cd test_FALCON-2018.05.04
sbatch test_FALCON-2018.05.04.sh

See software documentation and our FAQ (http://bioinfo.genotoul.fr/index.php/faq/) for more informations.