SOFT : EukCC
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Site du soft: https://github.com/Finn-Lab/EukCC
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LICENSE:
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GPL-v3

See software documentation for more informations.

Location: /usr/local/bioinfo/src/EukCC
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Load binaries and environment:
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-> Version v2.1.0

#Need Miniconda3
module load system/Miniconda3
module load bioinfo/EukCC-2.1.0

Be careful, to unload, not use module purge but in order:

module unload bioinfo/EukCC-2.1.0
module unload system/Miniconda3-4.7.10

Before first run, buildNCBI taxonomy database with ete3:

module load system/Miniconda3
module load bioinfo/EukCC-2.1.0
$ python
from ete3 import NCBITaxa
ncbi = NCBITaxa()
ncbi.update_taxonomy_database()

Example directory for use on cluster:
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/usr/local/bioinfo/src/EukCC/example_on_cluster

To submit: sbatch test_EukCC-2.1.0.sh

See software documentation and our FAQ (http://bioinfo.genotoul.fr/index.php/faq/) for more informations.