SOFT : Conterminator
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Site du soft: https://github.com/martin-steinegger/conterminator
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LICENSE:
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GPL-v"

See software documentation for more informations.

Location: /usr/local/bioinfo/src/Conterminator
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Load binaries and environment:
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-> Version e5d7579
# Need gcc-11.3.0
module load compiler/gcc-11.3.0

module load bioinfo/conterminator-e5d7579

Warning! By default all cpu are used on the node. Don't forget to adjust --threads option of conterminator command and --cpus-per-task option for Slurm.
Warning! Only run on Broadwell node (add --constraint=broadwell sbatch option)

For MMSEQS (you can choose other version)

export MMSEQS=/usr/local/bioinfo/src/Miniconda/Miniconda3/envs/mmseqs2-v14-7e284_env/bin/mmseqs



Example directory for use on cluster:
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/usr/local/bioinfo/src/Conterminator/example_on_cluster

To submit: sbatch test_conterminator-e5d7579.sh

See software documentation and our FAQ (http://bioinfo.genotoul.fr/index.php/faq/) for more informations.