SOFT : Cogent
------
Site du soft: https://github.com/Magdoll/Cogent
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LICENSE:
--------

BSD 3-Clause Clear

See software documentation for more informations.

Location: /usr/local/bioinfo/src/Cogent
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Load binaries and environment:
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-> Version v3.6

#Need Miniconda
module load system/Miniconda3-4.4.10

#Load Cogent, minimap2, mash and cDNA_Cupcake Tofu
module load bioinfo/Cogent-v3.6

Be careful, to unload, don't do "module purge" but, in order:
imodule unload bioinfo/Cogent-v3.6
module unload system/Miniconda3-4.4.10

-> Version v6.0.0

#Need Miniconda
module load system/Miniconda3-4.4.10

#Load Cogent, minimap2, mash and cDNA_Cupcake
module load bioinfo/Cogent-v6.0.0

Be careful, to unload, don't do "module purge" but, in order:
module unload bioinfo/Cogent-v6.0.0
module unload system/Miniconda3-4.4.10

-> Version v6.1.0

#Need Miniconda
module load system/Miniconda3-4.4.10

#Load Cogent, minimap2, mash and cDNA_Cupcake
module load bioinfo/Cogent-v6.1.0

Be careful, to unload, don't do "module purge" but, in order:
module unload bioinfo/Cogent-v6.1.0
module unload system/Miniconda3-4.4.10

-> Version v8.0.0

#Need Miniconda
module load system/Miniconda3-4.7.10

#Load Cogent, minimap2, mash and cDNA_Cupcake
module load bioinfo/Cogent-8.0.0

Be careful, to unload, don't do "module purge" but, in order:
module unload bioinfo/Cogent-8.0.0
module unload system/Miniconda3-4.7.10


Example directory for use on cluster:
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/usr/local/bioinfo/src/Cogent/example_on_cluster

To submit: sbatch test_Cogent-v3.6.sh

See software documentation and our FAQ (http://bioinfo.genotoul.fr/index.php/faq/) for more informations.