SOFT : CliqueSNV
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Site du soft: https://github.com/vtsyvina/CliqueSNV
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LICENSE:
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MIT

See software documentation for more informations.

Location: /usr/local/bioinfo/src/CliqueSNV
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Load binaries and environment:
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-> Version v2.0.3

module load bioinfo/CliqueSNV-2.0.3

java -jar $CLIQUE_HOME/clique-snv.jar -h ... 

or use absolute path
java -jar /usr/local/bioinfo/src/CliqueSNV/CliqueSNV-2.0.3/clique-snv.jar -h

Warning! By default all cpu are used on the node. Don't forget to adjust -threads option of clique-snv command and --cpus-per-task option for Slurm.

Example directory for use on cluster:
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/usr/local/bioinfo/src/CliqueSNV/example_on_cluster

To submit: sbatch test_CliqueSNV-2.0.3.sh

See software documentation and our FAQ (http://bioinfo.genotoul.fr/index.php/faq/) for more informations.