SOFT : CellRanger ------ Site du soft: https://support.10xgenomics.com/single-cell-gene-expression/software/pipelines/latest/what-is-cell-ranger ------------- LICENSE: -------- 10x Genomics End User Software License Agreement:https://support.10xgenomics.com/single-cell-gene-expression/software/downloads/latest See software documentation for more informations. Location: /usr/local/bioinfo/src/CellRanger --------- Load binaries and environment: ------------------------------ -> Version v2.1.1 #Need bcl2fastq module load bioinfo/bcl2fastq-2.20.0 (or other version of bcl2fastq if necessary) module load bioinfo/cellranger-2.1.1 -> Version v3.0.2 #Need bcl2fastq module load bioinfo/bcl2fastq-2.20.0 (or other version of bcl2fastq if necessary) module load bioinfo/cellranger-3.0.2 -> Version v3.1.0 #Need bcl2fastq module load bioinfo/bcl2fastq-2.20.0 (or other version of bcl2fastq if necessary) module load bioinfo/cellranger-3.1.0 -> Versionj v4.0.0 #Need bcl2fastq module load bioinfo/bcl2fastq-2.20.0 (or other version of bcl2fastq if necessary) module load bioinfo/cellranger-4.0.0 -> Version v5.0.1 #Need bcl2fastq module load bioinfo/bcl2fastq-2.20.0 (or other version of bcl2fastq if necessary) module load bioinfo/cellranger-5.0.1 -> Version v6.0.1 #Need bcl2fastq module load bioinfo/bcl2fastq-2.20.0 (or other version of bcl2fastq if necessary) module load bioinfo/cellranger-6.0.1 -> Version v6.0.2 #Need bcl2fastq module load bioinfo/bcl2fastq-2.20.0 (or other version of bcl2fastq if necessary) module load bioinfo/cellranger-6.0.2 -> Version v6.1.1 #Need bcl2fastq module load bioinfo/bcl2fastq-2.20.0 (or other version of bcl2fastq if necessary) module load bioinfo/cellranger-6.1.1 -> Version v6.1.1 #Need bcl2fastq module load bioinfo/bcl2fastq-2.20.0 (or other version of bcl2fastq if necessary) module load bioinfo/cellranger-6.1.2 -> Version v7.0.1 #Need bcl2fastq module load bioinfo/bcl2fastq-2.20.0 (or other version of bcl2fastq if necessary) module load bioinfo/cellranger-7.0.1 Example directory for use on cluster: ------------------------------------- /usr/local/bioinfo/src/CellRanger/example_on_cluster To submit: sbatch test_cellranger-2.1.1.sh See software documentation and our FAQ (http://bioinfo.genotoul.fr/index.php/faq/) for more informations.