SOFT : CONCOCT
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Site du soft: https://github.com/BinPro/CONCOCT
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LICENSE:
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Free. See https://github.com/BinPro/CONCOCT/blob/master/LICENSE.txt

See software documentation for more informations.

Location: /usr/local/bioinfo/src/CONCOCT
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Load binaries and environment:
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-> Version v0.4.1

#If optional dependancies needed (for velvet, binaries are velveth_128_LONG and velvetg_128_LONG)

module load system/R-3.4.3 bioinfo/velvet_1.2.10 bioinfo/bedtools-2.26.0 bioinfo/picard-1.88 bioinfo/samtools-0.1.19 bioinfo/bowtie2-2.3.3.1 bioinfo/Prodigal-2.6.3 system/parallel-20180122 bioinfo/ncbi-blast-2.6.0+
 
module load bioinfo/CONCOCT-0.4.1

-> Version v0.5.0_dd18083 (!!!development version)

#If optional dependancies needed (for velvet, binaries are velveth_128_LONG and velvetg_128_LONG)

module load system/R-3.4.3 bioinfo/velvet_1.2.10 bioinfo/bedtools-2.26.0 bioinfo/picard-1.88 bioinfo/samtools-0.1.19 bioinfo/bowtie2-2.3.3.1 bioinfo/Prodigal-2.6.3 system/parallel-20180122 bioinfo/ncbi-blast-2.6.0+

module load bioinfo/CONCOCT-0.5.0_dd18083

-> Version v1.0.0

#If optional dependancies needed (for velvet, binaries are velveth_128_LONG and velvetg_128_LONG)
module load system/R-3.4.3 bioinfo/velvet_1.2.10 bioinfo/bedtools-2.26.0 bioinfo/picard-1.88 bioinfo/samtools-0.1.19 bioinfo/bowtie2-2.3.3.1 bioinfo/Prodigal-2.6.3 system/parallel-20180122 bioinfo/ncbi-blast-2.6.0+

module load bioinfo/CONCOCT-1.0.0


Example directory for use on cluster:
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/usr/local/bioinfo/src/CONCOCT/example_on_cluster

To submit: sbatch test_CONCOCT-0.4.1.sh or cd CONCOCT-0.5.0_dd18083/ && sbatch test_CONCOCT-0.5.0_dd1083.sh or cd CONCOCT-v1.0.0/ && sbatch test_CONCOCT-v1.0.0.sh

See software documentation and our FAQ (http://bioinfo.genotoul.fr/index.php/faq/) for more informations.