SOFT : Bismark ------ Site du soft: http://www.bioinformatics.babraham.ac.uk/projects/bismark/ ------------- LICENSE: -------- GNU GPL v3 or later. See software documentation for more informations. Location: /usr/local/bioinfo/src/Bismark --------- Load binaries and environment: ------------------------------ -> Version v0.19.0 #Need bowtie or bowtie2 and samtools module load bioinfo/bowtie2-2.3.3.1 module load bioinfo/samtools-1.4 module load bioinfo/Bismark_v0.19.0 or use absolute path /usr/local/bioinfo/src/Bismark/Bismark_v0.19.0/ -> Version v0.20.0 #Need bowtie or bowtie2 and samtools module load bioinfo/bowtie2-2.3.3.1 module load bioinfo/samtools-1.4 module load bioinfo/Bismark_v0.20.0 or use absolute path /usr/local/bioinfo/src/Bismark/Bismark_v0.20.0/ -> Version v0.22.1 #Need bowtie or bowtie2 and samtools module load bioinfo/bowtie2-2.3.3.1 module load bioinfo/samtools-1.4 module load bioinfo/bismark_v0.22.1 or use absolute path /usr/local/bioinfo/src/Bismark/bismark_v0.22.1 -> Version v0.22.3 #Need bowtie or bowtie2 and samtools module load bioinfo/bowtie2-2.3.3.1 module load bioinfo/samtools-1.4 module load bioinfo/bismark_v0.22.3 or use absolute path /usr/local/bioinfo/src/Bismark/Bismark_v0.22.3 -> Version v0.23.0 #Need bowtie or bowtie2 and samtools module load bioinfo/bowtie2-2.3.3.1 module load bioinfo/samtools-1.4 module load bioinfo/Bismark-0.23.0 or use absolute path /usr/local/bioinfo/src/Bismark/Bismark-0.23.0 Example directory for use on cluster: ------------------------------------- /usr/local/bioinfo/src/Bismark/example_on_cluster To submit: sbatch test_Bismark_v0.19.0.sh See software documentation and our FAQ (http://bioinfo.genotoul.fr/index.php/faq/) for more informations.