SOFT : BS-Seeker2
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Site du soft: http://pellegrini-legacy.mcdb.ucla.edu/bs_seeker2/
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LICENSE:
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MIT

See software documentation for more informations.

Location: /usr/local/bioinfo/src/BS-Seeker2
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Load binaries and environment:
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-> Version v2.1.8

#One of the following short read aligners bowtie, bowtie2, ...
module load bioinfo/bowtie-1.2.1.1
or 
module load bioinfo/bowtie2-2.2.9

module load bioinfo/BS-Seeker2-v2.1.8



Warning! By default, BS-Seeker2 will create two bowtie/bowtie2 processes for directional library (four for un-directional library), and each process would run with 2 threads. User can change the number of total threads using parameter "--bt-p"/"--bt2-p". For example, "--bt-p 4" will require 8 CPUs in total.Don't forget to reservce this CPU with Slurm option --cpus-per-task.


Example directory for use on cluster:
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/usr/local/bioinfo/src/BS-Seeker2/example_on_cluster

To submit: sbatch test_BS-Seeker2-v2.1.8.sh

See software documentation and our FAQ (http://bioinfo.genotoul.fr/index.php/faq/) for more informations.