SOFT : Assexon
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Site du soft: https://github.com/yhadevol/Assexon
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LICENSE:
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GPL-v3

See software documentation for more informations.

Location: /usr/local/bioinfo/src/Assexon
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Load binaries and environment:
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-> Version 7479746

#Need Perl v5.18 or higher, trimGalore,cutadapat (in python-3.7.4 ) , usearch (< 10.0.240), SGA, exonerate
module load system/perl-5.26.3 bioinfo/TrimGalore-0.6.5 system/Python-3.7.4 bioinfo/usearch11.0.667 bioinfo/sga-0.10.15 bioinfo/exonerate-2.2.0

module load bioinfo/Assexon-7479746

Warning! By default all cpu are used on the node for assemble.pl. Don't forget to adjust --cpu option of assemble.pl command and --cpus-per-task option for Slurm.

Example directory for use on cluster:
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/usr/local/bioinfo/src/Assexon/example_on_cluster

To submit: sbatch test_Assexon-7479746.sh

See software documentation and our FAQ (http://bioinfo.genotoul.fr/index.php/faq/) for more informations.