SOFT : Assexon ------ Site du soft: https://github.com/yhadevol/Assexon ------------- LICENSE: -------- GPL-v3 See software documentation for more informations. Location: /usr/local/bioinfo/src/Assexon --------- Load binaries and environment: ------------------------------ -> Version 7479746 #Need Perl v5.18 or higher, trimGalore,cutadapat (in python-3.7.4 ) , usearch (< 10.0.240), SGA, exonerate module load system/perl-5.26.3 bioinfo/TrimGalore-0.6.5 system/Python-3.7.4 bioinfo/usearch11.0.667 bioinfo/sga-0.10.15 bioinfo/exonerate-2.2.0 module load bioinfo/Assexon-7479746 Warning! By default all cpu are used on the node for assemble.pl. Don't forget to adjust --cpu option of assemble.pl command and --cpus-per-task option for Slurm. Example directory for use on cluster: ------------------------------------- /usr/local/bioinfo/src/Assexon/example_on_cluster To submit: sbatch test_Assexon-7479746.sh See software documentation and our FAQ (http://bioinfo.genotoul.fr/index.php/faq/) for more informations.