SOFT : Anvio
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Site du soft: http://merenlab.org/software/anvio/
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LICENSE:
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GPL-v3

See software documentation for more informations.

Location: /usr/local/bioinfo/src/Anvio
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Load binaries and environment:
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-> Version v5.2

#Need samtools Prodigal HMMER 
module load bioinfo/samtools-1.8 bioinfo/Prodigal-2.6.3 bioinfo/hmmer-3.1b

module load bioinfo/anvio-5.2


-> Version 6.2

#Need Miniconda3-4.7.10
module load system/Miniconda3-4.7.10
module load bioinfo/anvio-6.2

Be careful, to unload, not use module purge but in order:

module unload bioinfo/anvio-6.2
module unload system/Miniconda3-4.7.10


-> Version v7.1

#Need Miniconda3
module load system/Miniconda3
module load bioinfo/anvio-7.1

Be careful, to unload, not use module purge but in order:

module unload bioinfo/anvio-7.1
module unload system/Miniconda3



Example directory for use on cluster:
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/usr/local/bioinfo/src/Anvio/example_on_cluster

To submit: sbatch test_anvio-5.2.sh

See software documentation and our FAQ (http://bioinfo.genotoul.fr/index.php/faq/) for more informations.