SOFT : ALLHiC
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Site du soft: https://github.com/tangerzhang/ALLHiC
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LICENSE:
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BSD

See software documentation for more informations.

Location: /usr/local/bioinfo/src/ALLHiC
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Load binaries and environment:
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-> Version 2fa6237

#Need Python-3.6.3, samtools v1.9, bedtool
module load system/Python-3.6.3 bioinfo/samtools-1.9 bioinfo/bedtools-2.27.1

module load bioinfo/ALLHiC-2fa6237

-> Version v0.9.13

#Need Python-3.6.3, samtools v1.9, bedtool
module load system/Python-3.6.3 bioinfo/samtools-1.9 bioinfo/bedtools-2.27.1

module load bioinfo/ALLHiC-v0.9.13

-> Version ae2b1fb

#Need Python-3.6.3, samtools v1.9, bedtool
module load system/Python-3.6.3 bioinfo/samtools-1.9 bioinfo/bedtools-2.27.1

module load bioinfo/ALLHiC-ae2b1fb


Example directory for use on cluster:
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/usr/local/bioinfo/src/ALLHiC/example_on_cluster

To submit: sbatch test_ALLHiC-2fa6237.sh

See software documentation and our FAQ (http://bioinfo.genotoul.fr/index.php/faq/) for more informations.